BioTorrents http://www.biotorrents.net/ MiscellaneousHere are all data, including sequence files, alignments, taxonomy assignments, and phylogenetic trees that accompany the manuscript: Yeast Communities of Diverse Drosophila Species: Comparison of Two Symbiont Groups in the Same Hosts by James Angus Chandler, Jonathan A. Eisen and Artyom Kopp http://www.biotorrents.net/details.php?id=263&hit=1 Wed, 29 Feb 2012 00:13:36 +0000 http://www.biotorrents.net/details.php?id=263&hit=1 GenomicsThese contain the sequence data from the tfbB, tfbD, and tfbG ChIPseq datasets in Halobacterium salinarum NRC-1. For each transcription factor there is a file entitled "_IP" and "_WCE". These correpond to the immunoprecipitation and background control reactions, respectively. This data was generated on the Illumina GA-II. Sequence has been aligned to the NRC-1 genome with large repeat sequences masked. contact mtfacciotti@ucdavis.edu for more information http://www.biotorrents.net/details.php?id=261&hit=1 Wed, 30 Nov 2011 22:27:53 +0000 http://www.biotorrents.net/details.php?id=261&hit=1 GenomicsContains .bam sequence files for the Supplemental ChIP-seq data for Halobacterium from the Wilbanks et al. 2011 publication on a ChIPseq workflow for the archaea. Files include the IP reaction and the Whole Cell Extract (WCE) control for two biological replicates of the TfbD general transcription factor, and the Bat transcription factor. http://www.biotorrents.net/details.php?id=259&hit=1 Thu, 22 Sep 2011 19:18:45 +0100 http://www.biotorrents.net/details.php?id=259&hit=1 BioinformaticsQIIME (canonically pronounced "Chime") stands for "Quantitative Insights Into Microbial Ecology". QIIME is a microbial community analysis toolkit developed in Python using PyCogent, and can be used for microbial ecology studies based on traditional and high-throughput sequencing methods. The best source of information on QIIME is the QIIME homepage: http://qiime.sourceforge.net/ http://www.biotorrents.net/details.php?id=253&hit=1 Thu, 30 Jun 2011 14:28:45 +0100 http://www.biotorrents.net/details.php?id=253&hit=1 GenomicsIllumina paired-end 77bp reads from the haloarchaea Natronococcus amylolyticus DSM 10524 with mean insert size of 425 FastQ quality scores are in 64 base scale. Reads were generated on an Illumina GAII machine at the University of California, Davis Genome Center DNA Technologies Core facility. http://www.biotorrents.net/details.php?id=250&hit=1 Mon, 27 Jun 2011 18:56:55 +0100 http://www.biotorrents.net/details.php?id=250&hit=1 GenomicsIllumina paired-end 77bp reads from the haloarchaea Natrialba aegyptia DSM 13077 with mean insert size of 469 FastQ quality scores are in 64 base scale. Reads were generated on an Illumina GAII machine at the University of California, Davis Genome Center DNA Technologies Core facility. http://www.biotorrents.net/details.php?id=249&hit=1 Mon, 27 Jun 2011 18:56:54 +0100 http://www.biotorrents.net/details.php?id=249&hit=1 GenomicsIllumina paired-end 77bp reads from the haloarchaea Haloterrigena salina JCM 13891 with mean insert size of 421 FastQ quality scores are in 64 base scale. Reads were generated on an Illumina GAII machine at the University of California, Davis Genome Center DNA Technologies Core facility. http://www.biotorrents.net/details.php?id=248&hit=1 Mon, 27 Jun 2011 18:56:53 +0100 http://www.biotorrents.net/details.php?id=248&hit=1 GenomicsIllumina paired-end 77bp reads from the haloarchaea Haloterrigena limicola JCM 13563 with mean insert size of 449 FastQ quality scores are in 64 base scale. Reads were generated on an Illumina GAII machine at the University of California, Davis Genome Center DNA Technologies Core facility. http://www.biotorrents.net/details.php?id=247&hit=1 Mon, 27 Jun 2011 18:56:51 +0100 http://www.biotorrents.net/details.php?id=247&hit=1 GenomicsIllumina paired-end 77bp reads from the haloarchaea Halorubrum litoreum JCM 13561 with mean insert size of 423 FastQ quality scores are in 64 base scale. Reads were generated on an Illumina GAII machine at the University of California, Davis Genome Center DNA Technologies Core facility. http://www.biotorrents.net/details.php?id=246&hit=1 Mon, 27 Jun 2011 18:56:50 +0100 http://www.biotorrents.net/details.php?id=246&hit=1 GenomicsIllumina paired-end 77bp reads from the haloarchaea Halorubrum kocurii JCM 14978 with mean insert size of 487 FastQ quality scores are in 64 base scale. Reads were generated on an Illumina GAII machine at the University of California, Davis Genome Center DNA Technologies Core facility. http://www.biotorrents.net/details.php?id=245&hit=1 Mon, 27 Jun 2011 18:56:49 +0100 http://www.biotorrents.net/details.php?id=245&hit=1 GenomicsIllumina paired-end 77bp reads from the haloarchaea Halococcus salifodinae DSM 8989 with mean insert size of 448 FastQ quality scores are in 64 base scale. Reads were generated on an Illumina GAII machine at the University of California, Davis Genome Center DNA Technologies Core facility. http://www.biotorrents.net/details.php?id=244&hit=1 Mon, 27 Jun 2011 18:56:49 +0100 http://www.biotorrents.net/details.php?id=244&hit=1 GenomicsIllumina paired-end 78bp reads from the haloarchaea Halococcus thailandensis JCM 13552 with mean insert size of 340 FastQ quality scores are in 64 base scale. Reads were generated on an Illumina GAII machine at the University of California, Davis Genome Center DNA Technologies Core facility. http://www.biotorrents.net/details.php?id=231&hit=1 Fri, 24 Jun 2011 20:17:43 +0100 http://www.biotorrents.net/details.php?id=231&hit=1 GenomicsIllumina paired-end 78bp reads from the haloarchaea Haloferax alexandrinus JCM 10717 with mean insert size of 322 FastQ quality scores are in 64 base scale. Reads were generated on an Illumina GAII machine at the University of California, Davis Genome Center DNA Technologies Core facility. http://www.biotorrents.net/details.php?id=229&hit=1 Fri, 24 Jun 2011 20:17:41 +0100 http://www.biotorrents.net/details.php?id=229&hit=1 GenomicsIllumina paired-end 78bp reads from the haloarchaea Haloferax prahovense DSM 18310 with mean insert size of 298 FastQ quality scores are in 64 base scale. Reads were generated on an Illumina GAII machine at the University of California, Davis Genome Center DNA Technologies Core facility. http://www.biotorrents.net/details.php?id=228&hit=1 Fri, 24 Jun 2011 20:17:40 +0100 http://www.biotorrents.net/details.php?id=228&hit=1 GenomicsIllumina paired-end 78bp reads from the haloarchaea Natrinema pellirubrum DSM 15624 with mean insert size of 293 FastQ quality scores are in 64 base scale. Reads were generated on an Illumina GAII machine at the University of California, Davis Genome Center DNA Technologies Core facility. http://www.biotorrents.net/details.php?id=227&hit=1 Fri, 24 Jun 2011 20:17:39 +0100 http://www.biotorrents.net/details.php?id=227&hit=1